Altus Pharmaceuticals Inc. S-1

ALTUS PHARMACEUTICALS INC.

EX-3.1 AMENDED AND RESTATED CERTIFICATE OF INCORPORATION

EX-3.3 SECOND AMENDED AND RESTATED BY-LAWS

EX-4.2 AMENDED AND RESTATED STOCKHOLDER VOTING AGREEMENT

EX-4.3 AMENDED AND RESTATED INVESTOR RIGHTS AGREEMENT

EX-4.4 AMENDED AND RESTATED RIGHTS OF FIRST REFUSAL

EX-4.5 AMENDED AND RESTATED VOTING STANDSTILL AGREEMENT

EX-4.6 FORM OF COMMON STOCK WARRANT TO VERTEX PHARMACEUTICALS

EX-4.7 FORM OF COMMON STOCK WARRANT TO GENERAL ELECTRIC CAPITAL CORP.

EX-4.8 FORM OF COMMON STOCK WARRANT TO OXFORD FINANCE CORP.

EX-4.9 FORM OF COMMON STOCK WARRANT TO CYSTIC FIBROSIS FOUNDATION

EX-4.10 FORM OF COMMON STOCK WARRANT TO TRANSAMERICA BUSINESS CREDIT CORP.

EX-4.11 FORM OF COMMON STOCK WARRANT TO SG COWEN & COMPANY

EX-4.12 FORM OF SERIES B PREFERRED STOCK WARRANT

EX-4.13 FORM OF SERIES C PREFERRED STOCK WARRANT

EX-10.1 1993 STOCK OPTION PLAN

EX-10.2 FORM OF INCENTIVE STOCK OPTION PLAN

EX-10.3 FORM OF NON-QUALIFIED STOCK OPTION AGREEMENT

EX-10.5 FORM OF INCENTIVE STOCK OPTION AGREEMENT

EX-10.6 FORM OF NON-QUALIFIED STOCK OPTION AGREEMENT

EX-10.8 MASTER LEASE AGREEMENT - GENERAL ELECTRIC CAPITAL CORP.

EX-10.9 MASTER LOAN AGREEMENT OXFORD FINANCE

EX-10.10 FORM OF PROMISSORY NOTE OXFORD FINANCE

EX-10.11 MASTER SECURITY AGREEMENT OXFORD FINANCE

EX-10.12 FORM OF PROMISSORY NOTE OXFORD FINANCE

EX-10.18 SEPARATION AGREEMENT - PETER LANCIANO

EX-10.19 CONSULTING AGREEMENT - MANUEL A. NAVIA

EX-10.20 DESCRIPTION OF ARRANGEMENT - JOHN P. RICHARD

EX-10.21 LEASE AGREEMENT RIZIKA REALTY TRUST

EX-10.22 LEASE AGREEMENT FORT WASHINGTON REALTY

EX-10.23 DESCRIPTION OF EXECUTIVE OFFICER RETENTION ARRANGEMENT

EX-10.24 SUBLEASE AGREEMENT VERTEX PHARMACEUTICALS

EX-10.25 SUBLEASE AGREEMENT TRANSKARYOTIC PHARMACEUTICALS

EX-21 SUBSIDIARIES OF THE REGISTRANT

EX-23.1 CONSENT OF DELOUTTE & TOUCHE LLP

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