UNITED STATES

SECURITIES AND EXCHANGE COMMISSION

Washington, D.C. 20549

FORM 10-Q

ý QUARTERLY REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the quarterly period ended March 31, 2012

o TRANSITION REPORT PURSUANT TO SECTION 13 OR 15(d) OF THE SECURITIES EXCHANGE ACT OF 1934

For the transition period from _______________ to _______________

Commission file number: 000-53451

ALTERNATE ENERGY HOLDINGS, INC.

(Exact name of Registrant as specified in its charter)

	Nevada	20-5689191
	(State or other jurisdiction of	(I.R.S. Employer
	incorporation or organization)	Identification No.)

	911 E. Winding Creek Dr., Suite 150, Eagle, Idaho	83616
	(Address of principal executive offices)	(Zip Code)

(208) 939-9311

(Registrant’s telephone number, including area code)

Indicate by check mark whether the registrant (1) has filed all reports required to be filed by Section 13 or 15(d) of the Securities Exchange Act of 1934 during the preceding 12 months (or for such shorter period that the registrant was required to file such reports), and (2) has been subject to such filing requirements for the past 90 days.

Yes ý No o

Indicate by check mark whether the registrant has submitted electronically and where posted on its corporate Web site, if any, every Interactive Data File required to be submitted and posted pursuant to Rule 405 of Regulation S-T during the preceding 12 months (or for such shorter period that the registrant was required to submit and post such files).

Yes ý No o

Indicate by check mark whether the registrant is a large accelerated filer, an accelerated filer, a non-accelerated filer, or a smaller reporting company. See the definitions of “large accelerated filer,” “accelerated filer” and “smaller reporting company” in Rule 12b-2 of the Exchange Act. (Check one)

Large Accelerated Filer o Accelerated Filer o

Non- Accelerated Filer o Smaller reporting company ý

(Do not check if a smaller reporting company)

Indicate by checkmark whether the registrant is a shell company (as defined in Rule 12b-2 of the Exchange Act).

Yeso No ý

As of May 15, 2012, there were 326,562,791 shares of common stock, $0.001 par value per share, outstanding.

ALTERNATE ENERGY HOLDINGS, INC.

TABLE OF CONTENTS

		Page No.
PART I - FINANCIAL INFORMATION

Item 1.	Condensed Consolidated Financial Statements.	3
Item 2.	Management’s Discussion and Analysis of Financial Condition And Results of Operations.	19
Item 3.	Quantitative and Qualitative Disclosures About Market Risk.	23
Item 4.	Controls And Procedures.	24

PART II - OTHER INFORMATION
Item 1.	Legal Proceedings.	24

Item 2.	Unregistered Sales of Equity Securities and Use of Proceeds.	25
Item 3.	Defaults Upon Senior Securities.	25
Item 4.	Mine Safety Disclosures - Not Applicable	25
Item 5.	Other Information.	25
Item 6.	Exhibits.	25
SIGNATURES		26

the terms “we”, “us”, “our”, “Company” , “AEHI” and “Alternate Energy Holdings” refer to Alternate Energy Holdings, Inc. and our wholly owned subsidiaries.

- 2 -

PART I - FINANCIAL INFORMATION

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED BALANCE SHEETS

MARCH 31, 2012 (Unaudited) AND DECEMBER 31, 2011

ASSETS	March 31, 2012 Unaudited			December 31 2011
CURRENT ASSETS:
Cash and Cash Equivalents	$	571,078		$	268,691
Cash - Escrow		2,565,000			2,018,500
Prepaid Expenses		-			5,604
Short-Term Investments		-			1,540,655

Total Current Assets		3,136,078			3,833,450

PROPERTY AND EQUIPMENT - Net		57,789			61,099

OTHER ASSET
Payette County - Site Work		8,718			-

Total Other Asset		8,718			-


TOTAL ASSETS	$	3,202,585		$	3,894,549


LIABILITIES AND STOCKHOLDERS' EQUITY

CURRENT LIABILITIES:
Accounts Payable	$	78,333		$	102,782
Due to Related Party		46,000			-

Total Current Liabilities		124,333			102,782

STOCKHOLDERS' EQUITY:
Common Stock, par value $.001, 500,000,000 shares authorized; 326,562,791 issued and 326,162,791 outstanding and 325,962,791 issued and 325,562,791 outstanding, respectively		326,563			325,963
Additional Paid in Capital		27,285,303			27,255,903
Accumulated Other Comprehensive Income(Loss)		1,303			(102,439	)
Treasury Stock (400,000 shares at cost)		(20,000	)		(20,000	)
Deficit Accumulated During Development Stage		(24,514,917	)		(23,667,660	)

Total Stockholders' Equity		3,078,252			3,791,767

TOTAL LIABILITIES AND STOCKHOLDERS' EQUITY	$	3,202,585		$	3,894,549

The accompanying notes are an integral part of these consolidated financial statements.

- 3 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED COMPREHENSIVE LOSS STATEMENTS

FOR THE THREE MONTHS ENDED MARCH 31, 2012 AND 2011

AND THE PERIOD FROM INCEPTION (AUGUST 29, 2005) THROUGH MARCH 31, 2012 (Unaudited)

	Three Months March 31 2012			Three Months March 31 2011			Inception to March 31 2012

REVENUES	$	-		$	169,000		$	923,650

COST OF SALES		-			161,588			929,237

GROSS PROFIT		-			7,412			(5,587	)

OPERATING EXPENSES:
General and Administrative Expenses		665,788			660,656			25,342,026

NET LOSS FROM OPERATIONS		(665,788	)		(653,244	)		(25,347,613	)

OTHER INCOME (EXPENSE)
Investment Income		24,844			77,249			466,461
Miscellaneous Income		-			-			9,186
Loss on Sales of Investments		(206,313	)		(90,985	)		(500,498	)
Impairment on Deposit		-			-			(100,000	)
Impairment on Asset Held for Sale		-			-			(38,419	)
Interest Expense		-			(41	)		(4,034	)
Total Other Income (Expense)		(181,469	)		(13,777	)		(167,304	)

Loss before Non-Controlling Interest in Variable Interest Entity		(847,257	)		(667,021	)		(25,514,917	)

Non-Controlling Interest in Variable Interest Entity		-			-			1,000,000

Net Loss Before Income Tax		(847,257	)		(667,021	)		(24,514,917	)

Income Tax Expense		-			-			-

NET LOSS	$	(847,257	)	$	(667,021	)	$	(24,514,917	)

OTHER COMPREHENSIVE INCOME, NET OF TAX
Unrealized Holding Gain Arising During the Period		103,742			44,743

COMPREHENSIVE LOSS	$	(743,515	)	$	(622,278	)



Earning Per Share:
Basic and Diluted Net Loss per Common Stock	$	(0.00	)	$	(0.00	)

WEIGHTED AVERAGE SHARES OUTSTANDING		326,436,791			325,087,791

The accompanying notes are an integral part of these consolidated financial statements.

- 4 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED STATEMENTS OF CHANGES IN STOCKHOLDERS' EQUITY

AND THE PERIOD FROM INCEPTION (AUGUST 29, 2005) THROUGH MARCH 31, 2012 (Unaudited)

2005	Price per Share		Number of Common Shares Issued		Common Stock		Additional Paid in Capital			Treasury Stock			Accumulated Other Comprehensive Income		Net Loss			Total
Founder Shares issued August 29, 2005		-		14,800,000	$	14,800	$	(14,800	)	$	-		$	-	$	-		$	-
Issuance of Common Stock for Services
October		0.0176		3,249,999		3,250		54,250			-			-		-			57,500
Amortization of common stock for services
October				-		-		8,750			-			-		-			8,750
November				-		-		8,750			-			-		-			8,750
December				-		-		8,750			-			-		-			8,750
Issuance of Common Stock for Payables:
September		0.0417		600,000		600		24,400			-			-		-			25,000
November		0.0500		300,000		300		14,700			-			-		-			15,000
Net Loss				-		-		-			-			-		(100,692	)		(100,692	)
Balances, December 31, 2005				18,949,999		18,950		104,800			-			-		(100,692	)		23,058
2006
Nussential Holdings Inc. shareholders prior to merger		-		4,252,088		4,252		(4,252	)		-			-		-			-
Issuance of Common Stock for Services
September		1.0077		1,149,999		1,150		1,157,599			-			-		-			1,158,749
November		0.9000		100,000		100		89,900			-			-		-			90,000
Amortization of common stock for services
January				-		-		8,750			-			-		-			8,750
February				-		-		8,750			-			-		-			8,750
March				-		-		8,750			-			-		-			8,750
April				-		-		8,750			-			-		-			8,750
May				-		-		8,750			-			-		-			8,750
June				-		-		8,750			-			-		-			8,750
July				-		-		8,750			-			-		-			8,750
August				-		-		8,750			-			-		-			8,750
Issuance of Common Stock for Cash
March		0.0500		1,000,000		1,000		49,000			-			-		-			50,000
May		0.0500		400,000		400		19,600			-			-		-			20,000
June		0.0500		100,000		100		4,900			-			-		-			5,000
October		0.6465		273,000		273		176,227			-			-		-			176,500
November		0.3333		116,000		116		38,550			-			-		-			38,666
December		0.4244		75,000		75		31,758			-			-		-			31,833
Purchase of Treasury Stock				-		-		-			(20,000	)		-		-			(20,000	)
Net Loss				-		-		-			-			-		(1,394,711	)		(1,394,711	)
Balances, December 31, 2006				26,416,086		26,416		1,738,082			(20,000	)		-		(1,495,403	)		249,095
2007
Issuance of Common Stock for Services
February		0.5000		920,000		920		459,080			-			-		-			460,000
March		0.5000		300,000		300		149,700			-			-		-			150,000
April		0.2500		100,000		100		24,900			-			-		-			25,000
June		0.2500		550,000		550		136,950			-			-		-			137,500
August		0.4000		531,552		532		212,089			-			-		-			212,621
September		0.1055		4,583,200		4,583		478,697			-			-		-			483,280
October		0.4000		366,400		366		146,194			-			-		-			146,560
November		0.1453		457,000		457		65,943			-			-		-			66,400
December		0.1000		57,500		58		5,692			-			-		-			5,750
Issuance of Common Stock for Cash
January		0.5300		23,000		23		12,227			-			-		-			12,250
February		0.5000		55,000		55		27,445			-			-		-			27,500
March		0.5000		10,000		10		4,990			-			-		-			5,000
April		0.4000		25,000		25		9,975			-			-		-			10,000
May		0.2500		206,000		206		51,294			-			-		-			51,500
June		0.2389		180,000		180		42,820			-			-		-			43,000
July		0.2500		2,591,000		2,591		645,159			-			-		-			647,750
August		0.2494		2,521,036		2,521		626,238			-			-		-			628,759
September		0.2500		64,000		64		15,936			-			-		-			16,000
October		0.2500		20,000		20		4,980			-			-		-			5,000
November		0.2000		287,500		287		57,213			-			-		-			57,500
December		0.1000		2,451,000		2,451		242,649			-			-		-			245,100
Net Loss				-		-		-			-			-		(3,394,200	)		(3,394,200	)
Balances, December 31, 2007				42,715,274	$	42,715	$	5,158,253		$	(20,000	)	$	-	$	(4,889,603	)	$	291,365

The accompanying notes are an integral part of these consolidated financial statements.

- 5 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED STATEMENTS OF CHANGES IN STOCKHOLDERS' EQUITY

AND THE PERIOD FROM INCEPTION (AUGUST 29, 2005) THROUGH MARCH 31, 2012 (Unaudited)

2008	Price per Share		Number of Common Shares Issued		Common Stock		Additional Paid in Capital		Treasury Stock			Accumulated Other Comprehensive Income		Net Loss			Total
Issuance of Common Stock for Services
January		0.1000		1,312,250		1,312		129,913		-			-		-			131,225
February		0.1000		70,000		70		6,930		-			-		-			7,000
March		0.1000		183,250		183		18,142		-			-		-			18,325
April		0.1000		20,000		20		1,980		-			-		-			2,000
May		0.1000		14,556,875		14,557		1,441,131		-			-		-			1,455,688
June		0.1000		4,365,342		4,365		432,169		-			-		-			436,534
July		0.2000		798,625		798		158,927		-			-		-			159,725
August		0.2000		71,500		72		14,228		-			-		-			14,300
September		0.2000		25,430		25		5,061		-			-		-			5,086
October		0.2000		207,147		207		41,222		-			-		-			41,429
November		0.2000		10,853		11		2,160		-			-					2,171
December		0.1000		3,140,777		3,141		310,934		-			-					314,075
Issuance of Common Stock for Cash
January		0.1000		7,720,000		7,720		764,280		-			-		-			772,000
February		0.1000		1,120,750		1,121		110,954		-			-		-			112,075
March		0.1000		225,000		225		22,275		-			-		-			22,500
April		0.1000		250,000		250		24,750		-			-		-			25,000
May		0.1000		50,000		50		4,950		-			-		-			5,000
June		0.1000		576,000		576		57,024		-			-		-			57,600
July		0.1021		307,301		308		31,072		-			-		-			31,380
August		0.1549		182,000		182		28,018		-			-		-			28,200
September		0.2609		153,666		154		39,946		-			-		-			40,100
December		0.1000		125,000		125		12,375		-			-		-			12,500
Net Loss				-		-		-		-			-		(3,820,601	)		(3,820,601	)
Balances, December 31, 2008				78,187,040		78,187		8,816,694		(20,000	)		-		(8,710,204	)		164,677
2009
Issuance of Common Stock for Services
January		0.1000		395,290		395		39,134		-			-		-			39,529
March		0.0500		138,065		138		6,765		-			-		-			6,903
April		0.0500		18,425,000		18,425		902,825		-			-		-			921,250
May		0.0500		945,400		945		46,325		-			-		-			47,270
June		0.0500		718,500		719		35,206		-			-		-			35,925
July		0.0500		755,000		755		36,995		-			-		-			37,750
August		0.0500		1,567,957		1,568		76,830		-			-		-			78,398
September		0.0500		1,431,340		1,431		70,136		-			-		-			71,567
October		0.0500		50,000		50		2,450		-			-		-			2,500
November		0.0500		441,580		442		21,637		-			-		-			22,079
December		0.0500		3,914,400		3,915		191,805		-			-		-			195,720
Issuance of Common Stock for Contract Option Fee
December		0.0500		500,000		500		24,500		-			-		-			25,000
Issuance of Common Stock for Cash
January		0.1000		25,000		25		2,475		-			-		-			2,500
February		0.0500		800,000		800		39,200		-			-		-			40,000
March		0.0500		330,600		330		16,200		-			-		-			16,530
April		0.0500		1,745,000		1,745		85,505		-			-		-			87,250
May		0.0500		700,000		700		34,300		-			-		-			35,000
June		0.0500		4,345,000		4,345		212,905		-			-		-			217,250
August		0.0500		440,000		440		21,560		-			-		-			22,000
September		0.0500		2,470,000		2,470		121,030		-			-		-			123,500
October		0.0500		3,509,000		3,509		171,941		-			-		-			175,450
November		0.0500		5,338,700		5,339		261,596		-			-		-			266,935
December		0.0500		8,977,236		8,977		439,933		-			-		-			448,910
Net Loss				-		-		-		-			-		(2,377,568	)		(2,377,568	)
Balances, December 31, 2009				136,150,108		136,150		11,677,947		(20,000	)		-		(11,087,772	)		706,325

The accompanying notes are an integral part of these consolidated financial statements.

- 6 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED STATEMENTS OF CHANGES IN STOCKHOLDERS' EQUITY

AND THE PERIOD FROM INCEPTION (AUGUST 29, 2005) THROUGH MARCH 31, 2012 (Unaudited)

2010	Price per Share		Number of Common Shares Issued			Common Stock			Additional Paid in Capital		Treasury Stock			Accumulated Other Comprehensive Income			Net Loss			Total
Issuance of Common Stock for Services
January		0.0500		17,500,000			17,500			857,500		-			-			-			875,000
February		0.0500		20,475,200			20,475			1,003,285		-			-			-			1,023,760
March		0.0500		1,307,546			1,308			64,069		-			-			-			65,377
April		0.0500		735,800			735			36,055		-			-			-			36,790
May		0.1000		100,000			100			9,900		-			-			-			10,000
June		0.1000		5,500,000			5,500			544,500		-			-			-			550,000
July		0.1500		5,854,465			5,854			872,316		-			-			-			878,170
August		0.5000		462,000			462			230,538		-			-			-			231,000
October		0.7000		145,000			145			101,355		-			-			-			101,500
November		0.7365		2,056,030			2,056			1,512,124		-			-			-			1,514,180
Issuance of Common Stock for Contract Option Fee
August		0.4000		500,000			500			199,500		-			-			-			200,000
September		0.7000		250,000			250			174,750		-			-			-			175,000
Issuance of Common Stock for Cash
January		0.0500		4,691,240			4,691			229,871		-			-			-			234,562
February		0.0500		42,188,960			42,189			2,067,259		-			-			-			2,109,448
March		0.0500		30,048,710			30,049			1,472,387		-			-			-			1,502,436
April		0.0500		4,610,000			4,610			225,890		-			-			-			230,500
May		0.1000		44,028,600			44,029			4,358,831		-			-			-			4,402,860
June		0.1000		7,348,580			7,349			727,509		-			-			-			734,858
July		0.4000		65,000			65			25,935		-			-			-			26,000
August		0.5000		425,000			425			212,075		-			-			-			212,500
September		0.7400		223,547			224			165,200		-			-			-			165,424
October		0.7000		279,145			279			195,123		-			-			-			195,402
November		0.7000		142,860			143			99,859		-			-			-			100,002
Net Loss				-			-			-		-			-			(8,487,722	)		(8,487,722	)
Other Comprehensive Loss				-			-			-		-			(243,773	)		-			(243,773	)
Balance - December 31, 2010				325,087,791		$	325,088		$	27,063,778	$	(20,000	)	$	(243,773	)	$	(19,575,494	)	$	7,549,599
2011
Issuance of Common Stock for Services
April		0.1000		100,000			100			9,900		-			-			-			10,000
May		0.1031		1,750,000			1,750			178,750		-			-			-			180,500
September		0.1000		25,000			25			2,475		-			-			-			2,500
Cancellation of Common Stock for Services
June		0.7300		(1,000,000	)		(1,000	)		1,000		-			-			-			-
Net Loss				-			-			-		-			-			(4,092,166	)		(4,092,166	)
Other Comprehensive Income				-			-			-		-			141,334			-			141,334
Balance - December 31, 2011				325,962,791			325,963			27,255,903		(20,000	)		(102,439	)		(23,667,660	)		3,791,767
2012
Issuance of Common Stock for Services
March		0.0500		600,000			600			29,400		-			-			-			30,000
Net Loss				-			-			-		-			-			(847,257	)		(847,257	)
Other Comprehensive Income				-			-			-		-			103,742			-			103,742
Balance - March 31, 2012				326,562,791			326,563			27,285,303		(20,000	)		1,303			(24,514,917	)		3,078,252

The accompanying notes are an integral part of these consolidated financial statements.

- 7 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

CONSOLIDATED STATEMENTS OF CASH FLOWS

FOR THE THREE MONTHS ENDED MARCH 31, 2012 AND 2011

AND THE PERIOD FROM INCEPTION (AUGUST 29, 2005) THROUGH MARCH 31, 2012 (Unaudited)

	Three Months March 31 2012			Three Months March 31 2011			Inception to March 31 2012
CASH FLOWS FROM OPERATING ACTIVITIES:
Net Loss	$	(847,257	)	$	(667,021	)	$	(24,514,917	)
Adjustments to reconcile Net Loss to Net Cash
Used by Operating Activities -
Common Stock Issued for Services		30,000			-			12,659,836
Common Stock Issued for Contract Option Fee		-			-			400,000
Loss from Variable Interest Entity		-			-			(1,000,000	)
Impairment on Asset Held for Sale		-			-			38,419
Depreciation		4,015			3,611			27,809
Loss (Gain) on Sales of Investments		206,313			90,985			500,498
Change in operating Assets and Liabilities -
Prepaid Expenses		5,604			-			-
Construction in Progress - Energy Neutral Homes		-			(204,658	)		-
Accounts Payable		(24,449	)		35,089			78,333
Accrued Payroll		-			25,500			-
Total Adjustments		221,483			(49,473	)		12,704,895
Net Cash Used by Operating Activities		(625,774	)		(716,494	)		(11,810,022	)

CASH FLOWS FROM INVESTING ACTIVITIES:
Purchase of Fixed Assets		(705	)		-			(85,598	)
Payette County Site work		(8,718	)		-			(8,718	)
Purchase of Short-Term Investments		(2,809,284	)		(645,756	)		(18,521,514	)
Proceeds from Sale of Short-Term Investments		4,247,368			1,406,997			17,983,900
Proceeds from Sale of Energy Neutral Model Home		-			278,000			278,000
Purchase of Energy Neutral Model Home		-			-			(278,000	)
Net Cash Provided (Used) by Investing Activities		1,428,661			1,039,241			(631,930	)

CASH FLOWS FROM FINANCING ACTIVITIES:
Receipt of Cash for Common Stock		-			-			14,552,030
Proceeds from Short-Term Borrowings		-			-			50,582
Payments on Short-Term Borrowings		-			-			(50,582	)
Transfer to Escrow account		(2,565,000	)		-0-			4,583,500
Transfer from Escrow account		2,018,500			-0-			2,018,500
Cash Received from Non-Controlling Members		-			-			1,000,000
Purchase of Treasury Stock		-			-			(20,000	)
Due to Related Party		46,000			106,914			152,914
Payment to Related Party		-			(106,914	)		(106,914	)
Payment to Employee		-			(60,000	)		(60,000	)
Due to Employee		-			-			60,000
Net Cash (Used) Provided by Financing Activities		(500,500	)		(60,000	)		13,013,030

NET INCREASE IN CASH		302,387			262,747			571,078

CASH - BEGINNING		268,691			234,426			-

CASH - ENDING	$	571,078		$	497,173		$	571,078



Supplemental Disclosures:
Cash paid for Income Taxes	$	-		$	-		$	-
Cash paid for Interest	$	-		$	41		$	4,034

The accompanying notes are an integral part of these consolidated financial statements.

- 8 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 1 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES

Description of Business

Alternate Energy Holdings, Inc., (and its subsidiaries Idaho Energy Complex, LLC, Green World Water, LLC, Energy Neutral, LLC and Reactor Development, LLC) formerly Nussentials Holdings Inc., is a development stage enterprise focused on the purchase, optimization and construction of green energy sources – primarily nuclear power plants.

Sunbelt Energy Resources Inc. was formed on August 29, 2005 to operate in the alternate energy industry and has limited operational activity. In September 2006, Sunbelt acquired Nussential Holdings, Inc. by exchanging 17,900,000 shares of Sunbelt which represented 100% of the outstanding shares for 21,399,998 shares of common stock of Nussential Holdings Inc. As a result of the acquisition, the shareholders of Sunbelt owned a majority of the voting stock of Nussentials Holdings, Inc. which changed its name to Alternate Energy Holdings, Inc. The merger has been accounted for as a reverse merger whereby Alternate Energy Holdings, Inc. is the accounting acquirer resulting in a recapitalization of Alternate Energy Holdings, Inc.’s equity. In connection with and simultaneous to the reverse merger, Nussentials Corporation, a wholly owned subsidiary of Nussentials Holdings Inc. was transferred to Nussential Holdings, Inc. majority shareholder through issuance of 4,252,088 shares of common stock.

Our Company

We are a holding company comprised of five operating corporate entities: Idaho Energy Complex, LLC, Reactor Land Development, LLC, Energy Neutral, LLC, Energy Neutral Development, LLC and Green World Water, LLC (which was formed in 2010, and has succeeded to the business formerly conducted by a fifth, inactive subsidiary, International Reactors Incorporated).

Idaho Energy Complex, LLC

Idaho Energy, an Idaho limited liability company and 100% wholly-owned subsidiary of the Company that was formed in March 2007, is the operating entity for our proposed $10 billion nuclear complex near Payette, Idaho. Idaho Energy is the manager of Reactor Land Development LLC, a Delaware limited liability company that is attempting to obtain funding for the nuclear facility land, water rights and the NRC operating license. Five thousand acres have been dedicated to the Project, which will provide enough electricity to power Idaho’s growth, as well as generate income through the sale of power to out-of-state markets. The Payette facility will feature a new advanced nuclear reactor design that does not require large amounts of water for cooling. The Company plans to build up to six advanced reactors at Idaho Energy and operate as an Independent Power Product (“IPP”).

- 9 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 1 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES - continued

Reactor Land Development, LLC

Reactor Land Development, LLC, a 99% owned subsidiary of Idaho Energy, is a Delaware limited liability company. Reactor Land Development, LLC began operations in September 2007, with Idaho Energy as its manager. Its purpose is to acquire funding for land and water rights, permits and licenses, development rights and such other properties and services necessary to develop approved sites in Idaho for one or more nuclear reactors.

Energy Neutral, LLC

Energy Neutral™, a 100% wholly-owned subsidiary of the Company, was formed to assist homeowners, businesses and farmers to operate with minimal or no reliance on the electrical grid. Energy Neutral’s primary services are: design and construction of residential “energy neutral” homes, evaluating existing homes, businesses and farms for conservation and renewable energy potential; drafting plans to attain or approach energy neutrality; and working with wind, conservation and solar suppliers and installers to install products in the marketplace. During 2010 and early 2011, Energy Neutral completed construction of six “energy neutral” homes in Boise, Idaho, which feature unique design elements as well as standard “energy neutral” elements, including the Energy Star certification and solar power generation. All five homes and our model home were sold during the year of 2011, representing our first revenues, for gross sales proceeds of $923,650. We plan to begin franchising the concept to developers and builders in a few select markets starting during fiscal year 2012 through Energy Neutral Development, LLC, a wholly owned subsidiary of Energy Neutral, LLC.

Green World Water, LLC

Green World Water,™ a 100% wholly-owned subsidiary of the Company was formed in 2010 to assist developing countries with power generation, as well as the production of potable water. Green World Water has succeeded to the business of another Company subsidiary, International Reactors Incorporated, a Nevada corporation, which was formed in November 2007 but now is inactive. Green World Water seeks to construct, in conjunction with other third parties, commercial nuclear reactors on oceanfront sites, particularly in Africa and western-friendly Middle Eastern countries to co-generate clean energy and desalinate water. Green World Water believes that advanced nuclear technology can be used to address electrical energy needs while simultaneously producing fresh water from ocean intake. The Company has an agreement with China National Nuclear Corporation (CNNC) to produce desalinization reactors in China to market on a worldwide basis. The Company is currently marketing these reactors in the Middle East and Africa.

- 10 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 1 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES - continued

Estimates

The preparation of the consolidated financial statements in conformity with accounting principles generally accepted in the United States of America requires management to make estimates and assumptions that affect reported amounts of assets, liabilities, revenues and expenses and the disclosures of contingent assets and liabilities. Accordingly, actual results could differ from those estimates.

Cash and Cash Equivalents

Alternate Energy Holdings, Inc. considers all highly liquid investments with an original maturity of three months or less to be cash equivalents. Cash equivalents are stated at cost, which approximates fair value. The Federal Deposit Insurance Corporation insures balances of up to $250,000 per institution at March 31, 2012 and December 31, 2011. The uninsured balances at March 31, 2012 and December 31, 2011 were $71,078 and $-0-, respectively.

Basic and Diluted Net Loss per Share

Basic and diluted net loss per share calculations are presented in accordance with FASB ASC 260-10, and are calculated on the basis of the weighted average number of common shares outstanding during the year. They include the dilutive effect of common stock equivalents in years with net income. Basic and diluted net loss per share are the same due to the absence of common stock equivalents.

Stock Based Compensation

Alternate Energy Holdings, Inc.’s non-employees, share-based expenses are recorded in accordance with FASB ASC 505-50. Alternate Energy Holdings, Inc. has not issued any stock options or stock warrants since its inception through March 31, 2012. For the three months ended March 31, 2012 and 2011, 600,000 valued at $30,000 and -0- shares of restricted stock were issued for officer/board services, respectively.

Fair Value Measurements

The Company considers fair value as the exchange price that would be received for an asset or paid to transfer a liability (an exit price) in the principal or most advantageous market for the asset or liability in an orderly transaction between market participants at the measurement date. The Company utilizes the following three-level fair value hierarchy to establish the priorities of the inputs used to measure fair value:

- 11 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 1 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES - continued

Fair Value Measurements - continued

Level 1 – Quoted prices in active market for identical assets or liabilities.

Level 2 – Observable inputs other than quoted market prices included in Level 1, such as quoted prices for similar assets and liabilities in active markets; quoted prices for identical or similar assets and liabilities in markets that are not active; or other inputs that are observable or can be corroborated by observable market data.

Level 3 – Unobservable inputs that are supported by little or no market activity and that are significant to the fair value of the assets or liabilities. This includes certain pricing models, discounted cash flow methodologies and similar techniques that use significant unobservable inputs.

Recently Issued Accounting Pronouncements

In June 2011, the FASB issued Accounting Standards Update (“ASU” 2011-05, Presentation of Comprehensive Income.) This ASU is intended to increase the prominence of other comprehensive income to financial statements by presenting components of net income and other comprehensive income in financial statements by presenting the components of net income and other comprehensive income in one continuous statement, referred to as the statement of comprehensive income, or two separate, but consecutive statements. The new guidance eliminates the current option to report other comprehensive income and it components in the statement of changes in stockholders’ equity. This new guidance is effective for fiscal years and interim periods beginning after December 15, 2011.

While the new guidance changes the presentation of comprehensive income, there are changes to the components that are recognized in net income or other comprehensive income under current accounting guidance. The adoption of the new guidance was effective for the first quarter 2012.

In May 2011, the FASB issued ASU 2011-04, (Amendments to Achieve Common Fair Value Measurement and Disclosure Requirements in U.S. GAAP and International Financial Reporting Standards (IFRSs”), which amends ACS 820, Fair Value Measurement. ASU 2011-04 does not extend the use of fair value accounting, but provides guidance on how it should be applied where its use is already required or permitted by other standards within U.S. GAAP or IFRSs. ASU 2011-14 changes the wording used to describe many requirements in U.S. GAAP for measuring fair value and for disclosing information about fair value measurements.

- 12 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 1 – SUMMARY OF SIGNIFICANT ACCOUNTING POLICIES - continued

Recently Issued Accounting Pronouncements - continued

Additionally, ASU 2011-14 clarifies the FASB’s intent about the application of existing fair value measurements. ASU 2011-14 is effective for interim and annual periods beginning after December 15, 2011 and is applied prospectively; therefore, the Company has adopted ASU 2011-04 in its first quarter of fiscal 2012.

Alternate Energy Holdings, Inc. does not expect the adoption of any other recently issued accounting pronouncements to have a significant impact on their financial position, results of operations, or cash flow.

Revenue Recognition on Sale of Real Estate

Sales and the associated gains and losses of real estate assets are recognized in accordance with the provisions of ASC Topic 360-20, “Property, Plant and Equipment – Real Estate Sale”. The specific timing of a sale is measured against various criteria in ASC Topic 360-20 related to the transaction and any continuing involvement in the form of management of financial assistance associated with the properties.

The Company utilizes the full accrual method and if the criteria are not met, the Company defers some or all of the gain recognition and account for the continued operations of the property by applying the finance, leasing, deposit, installment or cost recovery methods, as appropriate, until the sale criteria are met.

Payette County - Site Work

Amounts represent land improvements made to the entrance road of the future site of the Idaho Energy Complex, LLC.

NOTE 2 - INCOME TAXES

Alternate Energy Holdings, Inc. uses the liability method, where deferred tax assets and liabilities are determined based on the expected future tax consequences of temporary differences between the carrying amounts of assets and liabilities for financial and income tax reporting purposes. Alternate Energy Holdings, Inc. incurred net losses in the three months ending March 31, 2012 and 2011 and therefore, has no tax liability. The deferred tax asset generated by the carry-forward is approximately $17,414,407 at March 31, 2012 and will expire in 2029.

- 13 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 2 - INCOME TAXES - continued

Components of deferred tax assets at March 31, 2012 are as follows:

Deferred tax asset – net operating loss
Carry-forwards	$	17,414,407
Valuation allowance		(17,414,407	)
Net deferred tax asset	$	-0-

The Company has adopted ASC 740-10 “Income Taxes”. As a result of the assessment the Company has recognized no material tax adjustments to the unrecognized tax benefits. At the adoption date of January 1, 2008 and as of March 31, 2012, the Company has no unrecognized tax benefits. By statute, tax years ending December 31, 2011 through 2009 remain open to examination by the major taxing jurisdictions to which the Company is subject.

The reconciliation of the effective income tax rate of the Company to the statutory income tax rate for the fiscal year ended on December 31, 2011 and 2010 is as follows:

	2011			2010
Federal Income Tax Rate		34	%		34	%
State Income Tax Rate		0	%		0	%
Increase in Valuation Allowance		(34	%)		(34	%)
Effective Tax Rate		0	%		0	%

NOTE 3 - COMMON STOCK

During 2006, Alternate Energy Holdings, Inc.

-	Issued 4,252,088 shares of common stock to the Nussential Holdings shareholders in the reverse merger – See Note 1 for the details.

-	Issued 1,249,999 shares of common stock valued at $1,318,749 for services.

-	Issued 1,964,000 shares of common stock for cash received in the amount of $321,999.

-	Purchase 400,000 shares of treasury stock for cash in the amount of $20,000.

During 2007, Alternate Energy Holdings, Inc.

-	Issued 7,865,652 shares of common stock valued at $1,687,111 for services.

-	Issued 8,433,536 shares of common stock for cash received in the amount of $1,749,359.

During 2008, Alternate Energy Holdings, Inc.

-	Issued 24,762,049 shares of common stock valued at $2,587,558 for services.

-	Issued 10,709,717 shares of common stock for cash received in the amount of $1,106,355.

- 14 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 3 - COMMON STOCK -continued

During 2009, Alternate Energy Holdings, Inc.

Issued 28,282,532 shares of common stock valued at $1,433,891 for services.

Issued 500,000 shares of common stock valued at $25,000 for a contract option fee.

Issued 29,180,536 shares of common stock for cash received in the amount of $1,460,325.

During 2010, Alternate Energy Holdings, Inc.

Issued 54,136,041 shares of common stock valued at $5,094,064 for services.

Issued 750,000 shares of common stock valued at $375,000 for two contract option fees.

Issued 134,051,642 shares of common stock for cash received in the amount of $9,913,992.

During 2011, Alternate Energy Holdings, Inc.

Issued 1,875,000 shares of common stock valued at $193,000 for services.

Cancelled 1,000,000 shares of common stock.

In June 2011, the Company and a consultant entered into an agreement to rescind 1,000,000 shares of common stock previously awarded to them.

During 2012, Alternate Energy Holdings, Inc.

Issued 600,000 shares of common stock valued at $30,000 for services.

NOTE 4 - COMMITMENTS

Alternate Energy Holdings, Inc leases its office space under a two year lease and a home/office on a month-to-month basis under another lease. The two year lease is dated April 1, 2010 and expires April 30, 2012 and requires monthly payments of $2,000. The lease that expired on April 30, 2012 is currently be negotiated to extend the term for one year. Rent expense for the three months ending March 31, 2012 and 2011 was $6,000 and $10,000, respectively. The following is a schedule of future minimum payments under the operating lease at March 31, 2012:

For the year Ended
December 31
2012	$	2,000
Total	$	2,000

Alternate Energy Holdings, Inc. has entered into three contracts dated February 23, 2011, August 10, 2010 and September 10, 2010 to purchase land in Idaho. This option holds the contract open until December 11, 2011, January 10, 2012 and September 10, 2011, respectively. The option dated September 30, 2011 was extended for six months at a cost of a $500,000 nonrefundable deposit. The expenses of the other contracts are shown as Issuance of Common Stock for Option Fee on the Stockholder’s Equity statement.

- 15 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 5 - VARIABLE INTEREST ENTITY

FASB ASC 810 requires consolidation of certain entities in which equity investors do not have the characteristics of a controlling financial interest or do not have sufficient equity at risk for the entity to finance its activities without additional subordinated financial support from other parties. Reactor Development, LLC was formed for the purpose of developing and managing an energy complex power plant site. Alternate Energy Holdings, Inc. invested $1,000,000 which represents approximately 50% of Reactor Development LLC’s capital structure as of December 31, 2007. Furthermore, the daily operating decisions of Reactor Development, LLC are made by the members of Alternate Energy Holdings, Inc.’s management.

Under FASB ASC 810 Reactor Development, LLC is deemed a Variable Interest Entity to Alternate Energy Holdings, Inc. and as such Reactor Development, LLC’s financial information has been consolidated with Alternate Energy Holdings, Inc.

The consolidated financial statements include the full operating activities of Reactor Development, LLC, with amounts allocated to Reactor Development, LLC disclosed under “Non-Controlling Interest in Variable Interest Entity” in the accompanying consolidated income statement. Assets and liabilities of Reactor Development, LLC were $ -0- and $ -0-, respectively, at March 31, 2012 and December 31, 2011, respectively.

NOTE 6 – ASSET HELD FOR SALE

Alternate Energy Holdings, Inc constructed a model home to demonstrate that a competitively priced and energy cost efficient home can be constructed using energy-efficient techniques. The home creates more power than it uses on a month-to-month basis. The home was to be used to market the Energy Neutral brand name, however it was sold in March 2011.

NOTE 7 – AVAILABLE-FOR-SALE-SECURITIES

The Company’s short-term investments consist of mutual funds that are professionally managed by an investment company. The Company’s investments are classified as available-for sale and are recorded on the consolidated balance sheet at fair value based on Level 1 inputs. Unrealized gains and losses on the investments are included as a separate component of other comprehensive income. The Company will recognize an impairment charge if a decline in the fair value of its investments below cost basis is judged to be other-than-temporary. Unrealized gains, included in other comprehensive income at March 31, 2012 and 2011 were $103,742 and $44,743, respectively

- 16 -

ALTERNATE ENERGY HOLDINGS, INC.+

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 8 – DUE TO RELATED PARTY

At March 31, 2012 and 2011 the Company owed a consulting company owned by the CEO $46,000 and $-0-, respectively for CEO compensation. The balance owed was paid in full in April 2012.

In January, 2011 the CEO advanced the Company $106,914 to cover working capital expenses. There were no formal repayment terms or interest charged on this advance. The monies were repaid in full in March 2011.

NOTE 9 – ESCROW

Cash in escrow represents monies held in escrow for a potential funding agreement that did not materialize. The deposit was returned in April 2012.

NOTE 10 – LEGAL PROCEEDINGS

Currently, a civil action initiated by the U.S. Securities and Exchange Commission (“SEC”) is pending in the U.S. District Court for the District of Idaho, alleging, among other things, that our Company, a officer and another person employed with the Company, violated federal securities laws, among other things making false and misleading statements, artificially inflating the Company’s stock price, and subsequently liquidating the stock through secret sales (the “SEC” action). The Company’s accounts were frozen on December 18, 2010 following the filing of the SEC action. However, a federal judge subsequently dropped the freeze on all of the Company’s assets February 4, 2011, that imposed certain relief pending a final adjudication on the merits of the SEC allegations. The action is currently in the discovery phase and management is unable to determine the likelihood of an unfavorable outcome. The trial is scheduled for October 2012.

On January 11, 2011, a class action lawsuit was filed in the U.S. District Court of the District of Idaho by Lance Teague on behalf of purchasers of the common stock of the Company between September 20, 2006 through December 14, 2010, against the Company, an officer and director and another person employed by the Company. On June 17, 2011, an amended compliant was filed listing Perry Pehike, Jr. as lead plaintiff. The complaint alleges claims against the Company and certain senior officers and directors for violation of Section 10(b) of the Securities Exchange Act of 1934 (the “Exchange Act”) and Rule 10b-5 there under and claims against certain of its senior officers and directors for violations of Section 20A and Section 20(a) of the Exchange Act.

- 17 -

ALTERNATE ENERGY HOLDINGS, INC.

(A Development Stage Company)

NOTES TO CONSOLIDATED FINANCIAL STATEMENTS

NOTE 11- GOING CONCERN

Alternate Energy Holdings Inc’s financial statements have been prepared on the basis that it is a going concern, which contemplates the realization of assets and the satisfaction in the normal course of business. The Company has accumulated a deficit of $24,514,917 at March 31, 2012.

The Company’s continued existence is dependent upon its ability to raise capital or to successfully market and sell its products. The financial statements do not include any adjustments that might be necessary should the Company be unable to continue as a going concern.

NOTE 12 - SUBSEQUENT EVENTS

Burlile et al v AEHI Litigation – Lawsuit filed in April 2012 that attempts to overturn the County of Payette rezoning of the Payette County site. The Company plans to vigorously defend the case as it references many of the same complaints of the SEC litigation.

Monies held in escrow at March 31, 2012 were returned to the Company in April 2012.

In accordance with a Short-Form settlement Agreement (“Agreement”) entered into on April 2, 2012, the Company, Donald Gillispie and Jennifer Ransom have agreed to settle the previously-disclosed securities class action litigation, Case No. 1:10-cv-00634-BLW pending in the U.S. District Court, District of Idaho.

As set forth in the agreement, if the settlement becomes final, among other things, (i) the claims against the Defendants will be dismissed with prejudice and released, such that every member of the settlement class will be forever barred from asserting claims against the Defendants any claims alleged in the compliant or arising from the complaint, and (ii) a payment of $450,000 will be made by the Company no later than June 30, 2012 or a judgment shall be entered by the U.S. district Court, District of Idaho, against the Company in the amount of $2,000,000. The Defendants have denied and continue to deny each and all claims alleged by the plaintiffs in the Class Action Litigation. Nonetheless, the defendants have agreed to the agreement to eliminate the uncertainty, distraction, burden and expense of further litigation. The payment of the $450,000 will be paid out of insurance proceeds under the Company’s Director’s and Liability insurance policy.

- 18 -

ITEM 2. MANAGEMENT’S DISCUSSION AND ANALYSIS OF FINANCIAL CONDITION AND RESULTS OF OPERATIONS.

This Quarterly Report on Form 10-Q contains “forward-looking statements” within the meaning of the provisions of the Private Securities Litigation Reform Act of 1995 which represent our projections, estimates, expectations or beliefs concerning among other things, financial items that relate to management’s future plans or objectives or to our future economic and financial performance. In some cases, you can identify these statements by terminology such as “may”, “should”, “plans”, “believe”, “will”, “anticipate”, “estimate”, “expect” “project”, or “intend”, including their opposites or similar phrases or expressions. You should be aware that these statements are projections or estimates as to future events and are subject to a number of factors that may tend to influence the accuracy of the statements. These forward-looking statements should not be regarded as a representation by the Company or any other person that the events or plans of the Company will be achieved. You should not unduly rely on these forward-looking statements, which speak only as of the date of this Quarterly Report. We undertake no obligation to publicly revise any forward-looking statement to reflect circumstances or events after the date of this Quarterly Report or to reflect the occurrence of unanticipated events. You should, however, review the factors and risks we describe in the reports we file from time to time with the Securities and Exchange Commission (“SEC”) after the date of this Quarterly Report. Actual results may differ materially from any forward looking statement.

- 19 -

Overview

Description of Business

Our Company

Idaho Energy Complex, LLC

Idaho Energy, an Idaho limited liability company and 100% wholly-owned subsidiary of the Company that was formed in March 2007, is the operating entity for our proposed $10 billion nuclear complex near Payette, Idaho. Idaho Energy is the manager of Reactor Land Development, LLC, a Delaware limited liability company that is attempting to obtain funding for the nuclear facility land, water rights acquisition and the NRC operating license. Five thousand acres have been dedicated to the Project, which will provide enough electricity to power Idaho’s growth, as well as generate income through the sale of power to out-of-state markets. The Payette facility will feature a new advanced nuclear reactor design that does not require large amounts of water for cooling. The Company plans to build up to six advanced reactors at Idaho Energy and operate as an Independent Power Product (“IPP”).

Reactor Land Development, LLC

Energy Neutral, LLC

Energy Neutral™, a 100% wholly-owned subsidiary of the Company, was form to assist homeowners, businesses and farmers to operate with minimal or no reliance on the electrical grid. Energy Neutral’s primary services are: design and construction of residential “energy neutral” homes, evaluating existing homes, businesses and farms for conservation and renewable energy potential; drafting plans to attain or approach energy neutrality; and working with wind, conservation and solar suppliers and installers to install products in the marketplace. During 2010 and early 2011, Energy Neutral completed construction of six “energy neutral” homes in Boise, Idaho, which feature unique design elements as well as standard “energy neutral” elements, including the Energy Star certification and solar power generation. All five homes and the model home were sold during the year of 2011, representing our first revenues, for gross sales proceeds of approximately $923,650. We plan to begin franchising the concept to developers and builders in a few select markets starting during the fiscal year 2012 year through Energy Neutral Development, LLC, a wholly owned subsidiary of Energy Neutral, LLC.

Green World Water, LLC

- 20 -

Plan of Operations

The Company estimates the total cost of the first phase of the Payette County project will be approximately $150.0 million. The initial $150.0 million is planned to be raised through a private placement by Reactor Development, LLC, which shall result in the investors receiving in the aggregate up to a 5% ownership in the form of common stock. Any shortfall will have to be funded through such things as debt financing, cost-sharing by contractors and suppliers, or public offering.

While the success of the Project does not depend on financial assistance from the government, management believes that based on the 2005 Energy Policy Act, the Project may be eligible for an 80% Federal loan guarantee for the construction of new nuclear facilities, and an applicable Federal tax credit of $1.0 billion over eight years, which should be sufficient to cover all operating expenses during that timeframe. Furthermore, the excess heat for this plant may be used to produce biofuels from local crops and agriculture waste.

The intended use of the funds for the Reactor Land Project is shown below:

	In millions ($)
Payment to owner for site land		5
Payment for COLA plus 10% price escalation due to delays		50
Payments for third party project management, engineering support and G&A		25

Adjacent land with water rights		20
Long lead time equipment order deposit; reactor vessel and turbine		50
Total	$	150

From inception through March 31, 2012, the Reactor Land Development private placement has raised gross proceeds of $1,000,000 in exchange for a 1% equity interest in Reactor Land Development. If the Reactor Land Development, LLC private placement does not raise the entire $150.0 million listed above, the Company will seek to raise the remaining balance through debt financing and/or a public or private equity offering. The Company may adjust the budget categories in the execution of its permitting and development plans. The above line items represent managements best estimates, none of the line items is to be considered fixed or unchangeable.

Although the Company reserves the right to reallocate the funds according to field experience, the Company believes that the net proceeds from the planned offering will be sufficient to fund its initial capital requirements for the next year for operations. The foregoing assumes the offering will be fully subscribed, but there can be no assurance the Company will not require additional funds if unforeseen issues arise. Any additional required funds over the maximum offering amount will need to be financed as a loan. The availability and terms of any future financing will depend on market and other conditions. The amount of proceeds and uses are based upon the projections by management, which may also change according to unforeseen future events and market changes. There are no commitments for loans as of March 31, 2012.

In the continuance of the Company’s business operations it does not intend to purchase or sell any significant assets and the Company does not expect a significant change in the number of its employees, although the Company may add additional contractors during the fourth quarter of 2012.

In addition, the United States and the global business community is experiencing severe instability in the commercial and investment banking systems which is likely to continue to have far-reaching effects on the economic activities in the country for an indeterminable period. The long-term impact on the United States economy and the Company’s operating activities and its ability to raise capital cannot be predicted at this time, but could be substantial.

Project Economics

The Company believes that if it is able to raise $150.0 million, it may develop a site licensed for construction of the advanced reactor by the end of 2015. The Company believes that by acquiring and obtaining the required permits and approvals for the proposed site now, it will be able to offer a site and an NRC license 3 to 4 years sooner than might otherwise be achievable, which will offer additional value to the Idaho site due to earlier power generation/revenue potential of the site.

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Consolidated Results of Operations

Comparison of the Three Months Ended March 31, 2012 to March 31, 2011

During the three months ended March 31, 2012, we recognized revenues of $-0- as compared to $169,000 and cost of sales of $-0- and $161,588 for the same period in the prior fiscal year. The decrease in revenues is due to no sales any Energy Neutral homes in 2012 as compared to one sale that occurred during the three months ended March 31, 2011. During the three months ended March 31, 2012, we incurred operating expenses of $665,788 compared to $660,656 during the three months ended March 31, 2011. The following table is a comparison of the operational expenses that we incurred during the three months ended March 31, 2012 and 2011:

	Three Months Ended
	March 31,		March 31,		INCREASE
	2012		2011		(DECREASE)

Consulting services	$	94,366	$	79,508	$	14,858
Marketing services	$	-0-	$	36,303	$	(36,303	)
Board/Officer Services	$	213,000	$	100,000	$	113,000
Legal fees	$	97,173	$	228,908	$	(131,735	)
Travel	$	29,530	$	6,330	$	23,200

During the three months ended March 31, 2012 the Company did not engage as many attorneys in connection with our land approval or incur any expense for marketing services. Marketing expenses for the prior year’s period were incurred in connection with the efforts to obtain Payette County rezone approval which occurred during the second quarter of fiscal year 2012. Travel related expenses are higher in 2012 due to Greene World Water travel expenses to market and promote the desalinization units.

During the three months ended March 31, 2012, we recognized a net loss of $(847,257) compared to a net loss of $(667,021) during e three months ended March 31, 2011. The increase of $180,236 in net loss was due mainly to the loss on the sale of investments incurred during the quarter. The Company’s basic and diluted loss per share was $.00 during the three months ended March 31, 2012 and 2011.

Liquidity and Capital Resources

As of March 31, 2012, we had total of cash and cash equivalents of $571,078, total current assets of $3,136,078 and current liabilities of $124,333. The following table provides detailed information about our net cash flow for all financial statements periods presented in this report.

	Cash Flow Three Months Ended March 31,
	2012			2011

Net cash used by operating activities	$	(625,774	)	$	(716,494	)
Net cash provided by investing activities	$	1,428,661		$	1,039,241
Net cash used by financing activities	$	(500,500	)	$	(60,000	)
Net cash inflow	$	302,387		$	262,747

Operating Activities

During the three months ended March 31, 2012, the net cash used in our operating activities was $625,774. During the three months ended March 31, 2011, the net cash used in our operating activities was $716,494. Net cash used in our operating activities decreased by $90,720 for the three months ended March 31, 2012 as compared to the same period in 2011. This decrease in funds used by our operating activities was primarily due to a decrease of the cash expenditures for the construction on the Energy Neutral homes in 2012.

Investing Activities

During the three months ended March 31, 2012, the net cash provided by our investing activities was $1,428,661, comprised of the net proceeds from the sale of short-term investments. The net cash provided in our investing activities was $1,039,241 for the three months ended March 31, 2011, comprised of net proceeds from the sale of short-term investments and the purchase of the Energy Neutral model home. In April 2012, the funds held in escrow as of March 31, 2012 were released from escrow and returned to the Company, net of $10,000 in escrow fees and expenses.

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Financing Activities

Net cash used by financing activities increased by $440,500 for the three months ended March 31, 2012 as compared to the same period of 2011. This increase in funds used by our financing activities was primarily due to an increase in cash held in escrow as compared to the same period in the prior year.

As discussed above, we estimate that we will need to raise approximately $150 million in order to fund the Project. We plan on funding the Project through a private placement or other offering of securities of our subsidiary, Reactor Land Development, LLC, which would result in investors receiving up to 5% ownership in the first reactor unit. Any shortfall will have to be funded through other means, such as a debt financing, cost-sharing with contractors and suppliers, or other securities offerings, including a securities offering by our company or any of our other subsidiaries. If additional funds are raised through the issuance of equity securities, there may be a significant dilution in the value of our outstanding common stock.

Critical Accounting Policies

The Company has identified the policies below as critical to the Company business operations and the understanding of the Company results from operations. The impact and any associated risks related to these policies on the Company’s business operations is discussed throughout Management’s Discussion and Analysis of Financial Conditions and Results of Operations where such policies affect our reported and expected financial results. For a detailed discussion on the application of these and other accounting policies, see Note 1 in the Notes to the Condensed Consolidated Financial Statements beginning on page 9 for the three months ended March 31, 2012. Note that the Company’s preparation of this document requires the Company to make estimates and assumptions that affect the reported amounts of assets and liabilities, disclosure of contingent assets and liabilities at the date of the Company’s financial statements, and the reported amounts of expenses during the reporting periods.

Estimates

The preparation of financial statements in conformity with accounting principles generally accepted in the United States of America requires management to make estimates and assumptions that affect reported amounts of assets, liabilities, revenues and expenses and the and disclosures of contingent assets and liabilities. Accordingly, actual results could differ from those estimates. It is management’s opinion that all adjustments necessary for the fair statement of the results for the interim period have been made. All adjustments are of normal recurring nature or a description of the nature and amount of any adjustments other than normal recurring adjustments.

Cash and Cash Equivalents

Alternate Energy Holdings, Inc. considers all highly liquid investments with an original maturity of three months or less to be cash equivalents. Cash equivalents are stated at cost, which approximates fair value. The Federal Deposit Insurance Corporation insures balances of up to $250,000 per institution at March 31, 2012 and December 31, 2011. The uninsured balances at March 31, 2011 and December 31, 2011 were $71,078 and $-0-, respectively.

Stock-Based Compensation

The Company’s non-employees, share-based expenses are recorded in accordance with FASB ASC 505-50. The Company has not issued any stock options or stock warrants since its inception through March 31, 2012.

Off-Balance Sheet Arrangement

As of March 31, 2012, we had no off-balance sheet arrangements as defined in Item 303(a)(4) of Regulation S-K.

ITEM 3. QUANTITATIVE AND QUALITATIVE DISCLOSURES ABOUT MARKET RISK.

Changes in United States interest rates would affect the interest earned on our cash and cash equivalents. Based on our overall cash and cash equivalents interest rate exposure at March 31, 2012, a near-term change in interest rates, based on historical movements, would not have a material adverse effect on our financial position or results of operations.

We have operated primarily in the United States. Accordingly, we have not had any significant exposure to foreign currency rate fluctuations.

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ITEM 4. CONTROLS AND PROCEDURES.

The Company maintains disclosure controls and procedures (as defined in Rules 13a-15(e) and 15d-15(e)) under the Securities Exchange Act of 1934, as amended (the “Exchange Act”), that are designed to ensure that information required to be disclosed in its reports filed under the Exchange Act is recorded, processed, summarized and reported within the time periods specified in the SEC’s rules and forms, and that such information is accumulated and communicated to our management, including its Chief Executive Officer and Chief Financial Officer, as appropriate, to allow timely decisions regarding required disclosure. In designing and evaluating the disclosure controls and procedures, management recognized that any controls and procedures, no matter how well designed and operated, can provide only reasonable assurance of achieving the desired control objectives, and management necessarily was required to apply its judgment in evaluating the cost-benefit relationship of possible controls and procedures.

The Company carried out an evaluation, under the supervision and with the participation of management, including its Chief Executive Officer and Chief Financial Officer, of the effectiveness of the design and operation of its disclosure controls and procedures as of March 31, 2012, the end of the period covered by this Quarterly Report. Based on that evaluation, the Company’s Chief Executive Officer and Chief Financial Officer concluded that its disclosure controls and procedures were effective as of March 31, 2012.

There were no significant changes in the Company’s internal controls over financial reporting, during the quarter ended March 31, 2012, that have materially affected, or are reasonably likely to materially affect, the Company’s internal controls over financial reporting.

PART II - OTHER INFORMATION

ITEM 1. LEGAL PROCEEDINGS.

Class Action Litigation

As set forth in the agreement, if the settlement becomes final, among other things, (i) the claims against the Defendants will be dismissed with prejudice and released, such that every member of the settlement class will be forever barred from asserting claims against the Defendants any claims alleged in the compliant or arising from the compliant, and (ii) a payment of $450,000 will be made by the Company no later than June 30, 2012, a judgment shall be entered by the U.S. district Court, District of Idaho, against the Company in the amount of $2,000,000. The Defendants have denied and continue to deny each and all claims alleged by the plaintiffs in the Class Action Litigation. Nonetheless, the defendants have agreed to the agreement to eliminate the uncertainty, distraction, burden and expense of further litigation. The payment of the $450,000 will be paid out of insurance proceeds under the Company’s Director’s and Liability Insurance Policy.

Other Legal Proceedings

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The Company anticipates that it will from time to time become subject to claims and legal proceedings arising in the ordinary course of business. It is not feasible to predict the outcome of any such proceedings and the Company cannot assure that their ultimate disposition will not have a materially adverse effect on the Company business, financial condition, cash flows or results of operations.

ITEM 2. UNREGISTERED SALES OF EQUITY SECURITIES AND USE OF PROCEEDS.

During the quarter ended March 31, 2012, we issued an aggregate of 600,000 shares of our common stock, par value $.001 per share (“Common Stock”), 200,000 shares of common stock to each of our three newly appointed Board members. The 600,000 shares had an aggregate value of $30,000 based on the current market price of our stock. The foregoing shares were issued in reliance of the exemption provided by section 4(2) of the Securities Act of 1933, as amended as such issuances were isolated private transactions by the Company which did not involve a public offering.

ITEM 3. DEFAULTS UPON SENIOR SECURITIES.

None

ITEM 4. MINE SAFETY DISCLOSURES - Not Applicable.

ITEM 5. OTHER INFORMATION

None

ITEM 6. EXHIBITS.

(a)

Exhibits:

	31.1	Certification of the Chief Executive Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002. *

	31.2	Certification of the Chief Financial Officer pursuant to Section 302 of the Sarbanes-Oxley Act of 2002. *

	32	Certification of Chief Executive Officer and Chief Financial Officer pursuant to 18 U.S.C. Section 1350, as adopted pursuant to Section 906 of the Sarbanes-Oxley Act of 2002. *

	101.INS**	XBRL Instance

	101.SCH**	XBRL Taxonomy Extension Schema

	101.CAL**	XBRL Taxonomy Extension Calculation

	101.DEF**	XBRL Taxonomy Extension Definition

	101.LAB**	XBRL Taxonomy Extension Labels

	101.PRE**	XBRL Taxonomy Extension Presentation

*	Filed herewith

XBRL information is furnished and not filed or a part of a registration statement or prospectus for purposes of sections 11 or 12 of the Securities Act of 1933, as amended, is deemed not filed for purposes of section 18 of the Securities Exchange Act of 1934, as amended, and otherwise is not subject to liability under these sections.

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SIGNATURES

Pursuant to the requirements of the Securities Exchange Act of 1934, the Registrant has duly caused this report to be signed on its behalf by the undersigned thereunto duly authorized.

Date: May 15, 2012

	ALTERNATE ENERGY HOLDINGS, INC.


	By:	/s/ DONALD L. GILLISPIE
	Donald L. Gillispie President, Chief Executive Officer and Director (principal executive officer)


	By:	/s/ RICK J. BUCCI
	Rick J. Bucci Vice-President and Chief Financial Officer (principal financial officer and principal accounting officer)

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ALTERNATE ENERGY HOLDINGS, INC. 10-Q